CD task10 protocol

Script with all analysis steps

In this script, all the required commands for the analysis methods are listed.

analysis.sh

Pymol visualisation

simple Pymol visalization script

create_pymol_vis.py

optimal bitrate: (50 * 25 * width * height) / 256 => 1 500 000

mencoder "mf://*.png" -mf type=png -ofps 25 -ovc lavc -lavcopts vcodec=mpeg4:vpass=1:vbitrate=2160000:mbd=2:keyint=132:v4mv:vqmin=3:lumi_mask=0.07:dark_mask=0.2:scplx_mask=0.1:tcplx_mask=0.1:naq -o wt_movie2.avi