Molecular Dynamics Simulations Gaucher Disease Scripts
From Bioinformatikpedia
Wildtype
#!/bin/bash #SBATCH -o /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A/long/out #SBATCH -D /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A/long/ #SBATCH -J 2nt0_A #SBATCH --clusters=mpp1 #SBATCH --get-user-env #SBATCH --ntasks=16 #SBATCH --mail-type=end #SBATCH --mail-user=angermue@in.tum.de #SBATCH --export=NONE #SBATCH --time=32:00:00 source /etc/profile.d/modules.sh module load gromacs ROOT=/home/hpc/pr58ni/di34fon/mp/tasks/task08 export PATH="$ROOT/ag:$PATH" AGroS 2nt0_A.pdb -dir $ROOT/2nt0_A/long -threads 16 -v
W209R
#!/bin/bash #SBATCH -o /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A_W209R/long/out #SBATCH -D /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A_W209R/long/ #SBATCH -J 2nt0_A_W209R #SBATCH --clusters=mpp1 #SBATCH --get-user-env #SBATCH --ntasks=32 #SBATCH --mail-type=end #SBATCH --mail-user=angermue@in.tum.de #SBATCH --export=NONE #SBATCH --time=32:00:00 source /etc/profile.d/modules.sh module load gromacs ROOT=/home/hpc/pr58ni/di34fon/mp/tasks/task08 export PATH="$ROOT/ag:$PATH" AGroS 2nt0_A_W209R.pdb -dir $ROOT/2nt0_A_W209R/long -threads 32
L470P
#!/bin/bash #SBATCH -o /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A_L470P/long/out #SBATCH -D /home/hpc/pr58ni/di34fon/mp/tasks/task08/2nt0_A_L470P/long/ #SBATCH -J 2nt0_A_L470P #SBATCH --clusters=mpp1 #SBATCH --get-user-env #SBATCH --ntasks=32 #SBATCH --mail-type=end #SBATCH --mail-user=angermue@in.tum.de #SBATCH --export=NONE #SBATCH --time=32:00:00 source /etc/profile.d/modules.sh module load gromacs ROOT=/home/hpc/pr58ni/di34fon/mp/tasks/task08 export PATH="$ROOT/ag:$PATH" AGroS 2nt0_A_L470P.pdb -dir $ROOT/2nt0_A_L470P/long -threads 32