Fabry:Sequence-based mutation analysis/Journal
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Fabry Disease » Sequence-based mutation analysis » Journal
INSERT IMPORTANT AND INTELLIGENT STUFF RIGHT HERE
Contents
Amino acid properties
IN: aa_properties.txt, resMass.txt<ref>http://education.expasy.org/student_projects/isotopident/htdocs/aa-list.html</ref>, pickedSNPsNOINFO.txt
OUT: SNP_aaProps.txt, SNP_aaProps.wiki
perl read_AAProp.pl
Location
IN: pickedSNPsNOINFO.txt, P06280.dssp.ss, P06280.reprof.ss, P06280.psipred.ss
OUT: SNP_secStruc.txt, SNP_secStruc.wiki
perl compare_seq_struc.pl
Substitution matrices
IN: pickedSNPsNOINFO.txt, BLOSUM62.csv, PAM250.csv
OUT: SNP_substMatr.txt, SNP_substMatr.wiki
perl subst.pl
PSSM
Multiple sequence alignment
Scoring methods
SIFT
Polyphen2
IN: pickedSNPsNOINFO.txt
OUT: Polyphen.batch
perl prepBatchPolyphen2.pl
