.snapfunrc
From Bioinformatikpedia
[snapfun] # snapfun_utildir=path - path to package utilities, default: /usr/share/snapfun snapfun_utildir=/usr/share/snapfun # librg_utils_perl=path - path to librg-utils-perl utilities, default: /usr/share/librg-utils-perl librg_utils_perl=/usr/share/librg-utils-perl # blastpgp_segfilter=[T|F] - SEG filtering for blastpgpg, untested, default: F blastpgp_segfilter=F # blastpgp_processors=int - number of processors to use with blastpgp and hmmpfam, default: 1 blastpgp_processors=1 # hmmpfam executable hmmpfam=hmm2pfam # psic matrix psic_matrix=/usr/share/psic/blosum62_psic.txt # psic runner runpsic=/usr/share/rost-runpsic/runNewPSIC.pl # default mode of the program: [published|optimized|[predictprotein] mode=optimized [data] # swiss_dat=path - location of UniProt/Swiss-Prot dat file swiss_dat=/mnt/project/pracstrucfunc12/data/swissprot/uniprot_sprot.dat # db_swiss=path - path to ID index of Swiss-Prot dat file (generated by /usr/share/librg-utils-perl/dbSwiss.pl) db_swiss=/mnt/project/pracstrucfunc12/data/swissprot/dbswiss # pfamdata=path - path to pfam database pfamdata=/mnt/project/pracstrucfunc12/rost_db/data/pfam_legacy/Pfam_ls [blast] # uniref=path - path to comprehensive sequence database (UniRef or equivalent) uniref=/mnt/project/pracstrucfunc12/data/big/big # uniref90=path - path to redundancy reduced database (UniRef90 or equivalent) uniref90=/mnt/project/pracstrucfunc12/data/big/big_80 # swiss=path - path to SwissProt database swiss=/mnt/project/pracstrucfunc12/data/swissprot/uniprot_sprot