TSD Homology modelling protocol
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Template selection
HHpred and COMA were employed in order to complement the 3 sequence identity classes.
SWISS-MODEL
The modelling was performed with the webserver of SWISS-MODEL in automated mode and alignment mode.
iTasser
Modeller
Get all necessary files <source lang="bash">
test
</source>
6Å RMSD using Pymol
- Load template and model
- For each select active site
- Expand selections by 6Å
- Extract selections into objects
- Align objects
