Task 4: Homology-based structure prediction
From Bioinformatikpedia
More detailed information about the generation of the results can be found in the Task 4 Protocol.
Datasets
In order to generate a model for our protein we first need to find homologous structures on which we base our model on. For this task we use HHpred and COMA.
HHpred
Region | PolyPhobius Start | Stop | UniProt Start | Stop | OPM Start | Stop | PDBTM Start | Stop |
---|---|---|---|---|---|---|---|---|
1.transmembrane | 30 | 55 | 33 | 55 | 34 | 52 | 35 | 52 |
2.transmembrane | 66 | 88 | 66 | 88 | 67 | 91 | 68 | 84 |
3.transmembrane | 105 | 126 | 105 | 126 | 101 | 126 | 109 | 123 |
4.transmembrane | 150 | 170 | 150 | 170 | 150 | 170 | 152 | 166 |
5.transmembrane | 188 | 212 | 188 | 212 | 187 | 209 | 191 | 206 |
6.transmembrane | 329 | 352 | 330 | 351 | 330 | 351 | 334 | 347 |
7.transmembrane | 367 | 386 | 367 | 388 | 363 | 386 | 368 | 382 |
COMA
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