Talk:Sequence-based predictions (PKU)

This is just a place to add criticism and or positive feedback so we Jonathan and Sebastian have a possibility to improve. Please note, that we wont be able to adress all matters immediately but we will address them eventually!

source: [1]

We also want to mention our slogan for this current teamwork

criticism

• There are several typos and some spelling mistakes still in the text, e.g. reagions, ver (instead of very), cant, ties, tree (instead of three) ... and so on. I found myself almost correcting some of those ;)

GOpet section

• The link within the table does not work, and the link in the text above is labelled gene-ontology.com although it is really AmiGO http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=UniProtKB:P00439
• You state that 7 of the predicted annotations are found within the 10 from AmiGO .... but I can not reproduce this (e.g. 0003824 is not in there). The AmiGO GO terms should not be viewed as an gold standard anyway.

positive feedback

• The calculated scores e.g. for the secondary structure prediction are very helpful to asses the performance of the methods. The scores are additionally well displayed.

• Altogether the wiki entry is very interesting and nice to read.