Sequence Alignments TSD

Sequence searches

There are several alignment methods provided by various initiatives, who tackle the problem of sequence searches. Here some of them are applied for the Hex A protein and analyzed. For the searches non redundant protein databases are used. The outputs are adapted to each other and put in comparison in order to determine the best results. A protocol containing the basic steps taken is available.

Blast

... Figure <xr id="fig:Agent_LifeCycle#1"/> illustrates the standard agent's life-cycle. ... Figure <xr id="fig:Agent_LifeCycle#2"/> illustrates the finer agent's life-cyle, ... <figure id="fig:Agent_Life_Cycle"> <twocolumns> <subfigure>

File:Standard Agent LifeCycle.png

Standard Agent's Life-Cycle

</subfigure> <break> <subfigure>

File:Finer Agent LifeCycle.png

Finer Agent's Life-Cycle

</subfigure> </twocolumns>

Life Cycles of Agent

</figure>

PSI-Blast

Iterations	2	2	10	10
E-value	0.002	10E-10	0.002	10E-10
Runtime
No. hits

Table 1: Different performances of PSI-Blast.