Normal mode analysis GLA

^{by Benjamin Drexler and Fabian Grandke}

Methods

WEBnm@

The normal mode analysis webserver WEBnm@ was published by Siv Midtun Hollup, Gisle Salensminde and Nathalie Reuter in 2005<ref name=webnma>Siv Midtun Hollup, Gisle Salensminde and Nathalie Reuter. "WEBnm@: a web application for normal mode analyses of proteins". BMC Bioinformatics 2005, 6:52. PubMed</ref>. It allows the calculation of the normal modes and offers serveral types of analyses, i.e. deformation energy, animation of the vibration, atomic squared displacements and vector field analysis.

Usage

• Webserver: http://apps.cbu.uib.no/webnma/home
• Input
  • PDB structure (ID or file)
  • Specification of chains
• Output
  • Animation of vibration
  • Deformation energy
  • Squared atomic displacements

References

<references/>