Lab Journal Task 3 Hemo
From Bioinformatikpedia
Contents
Secondary Structure Predictions
= Output unification
DSSP, reprof and psipred all have different output types. In order to compare the results, the following mappings were performed
- reprof
- H helix
- E extended
- L loop -> C
- DSSP
- H = alpha helix -> H
- B = residue in isolated beta-bridge -> C
- E = extended strand, participates in beta ladder -> E
- G = 3-helix (3/10 helix) -> H
- I = 5 helix (pi helix) -> C
- T = hydrogen bonded turn - C
- S = bend -> C
psipred:
- H helix
- E sheet
- C disordered
Disorder Prediction
Transmembrane Helix Prediction
Signal Peptides
signalP server Version 4.1
- Organism: Eukaryote
- D-cutoff values: default
- Input may include TM-helices: yes
- Restrictions: None
