Structural Alignments (Phenylketonuria)

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Revision as of 14:57, 28 May 2013 by Worfk (talk | contribs) (Dataset generation)

Summary

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Explore structural alignments

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Dataset generation

Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase)

  • reference structure of PAH: 2PAH (96,417%)
  • identical seqeunce with filled binding site:
  • identical sequence wit unfilled binding site:
  • low sequence identity: 3LUY (32,2%)
  • high sequence identity: pdb ID: 2PHM (89,7%)
  • CAT: 1J8U (1.10.800.10) - there is no other category than 1.10.800.10 for CAT
  • CA: 2B5U (1.10.287.620)
  • C: 3BQO (1.25.40.210)
  • other CATH category: 1V8Hs (2.60.40.10)

Pymol

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LGA

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SSAP / CATHEDRAL (used by CATH)

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Topmatch

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SAP or CE

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Modelling scores

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Evaluate sequence alignments

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References

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