Sequence-based predictions

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Revision as of 15:04, 31 May 2011 by Landerer (talk | contribs) (→‎GOPET)

Sequence-based predictions

1. Secondary structure prediction

PSIPRED

Jpred3

Comparison with DSSP

2. Prediction of disordered regions

DISOPRED

POODLE

IUPRED

3. Prediction of transmembrane alpha-helices and signal peptides

TMHMM

Phobius and PolyPhobius

OCTOPUS and SPOCTOPUS

SignalP

TargetP

4. Prediction of GO terms

GOPET

GO:0030106 || F || 88% || MHC class I receptor activity
GOID Aspect Confidence GO Term
GO:0004872 F 91% receptor activity

Pfam

ProtFun 2.2

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