Sequence-based predictions GLA

^{by Benjamin Drexler and Fabian Grandke}

Secondary structure prediction

GLA sequence

PSIPRED

http://bioinf.cs.ucl.ac.uk/psipred/

Jpred3

http://www.compbio.dundee.ac.uk/www-jpred/index.html

Comparison with DSSP

http://swift.cmbi.ru.nl/servers/html/

Prediction of disordered regions

DISOPRED

http://bioinf.cs.ucl.ac.uk/disopred/

POODLE

http://mbs.cbrc.jp/poodle/poodle.html

IUPRED

http://iupred.enzim.hu/index.html

META-Disorder

http://www.predictprotein.org/

Prediction of transmembrane alpha-helices and signal peptides

Additional Proteins

• BACR_HALSA
• RET4_HUMAN
• INSL5_HUMAN
• LAMP1_HUMAN
• A4_HUMAN

Phobius and PolyPhobius

http://phobius.sbc.su.se/

OCTOPUS and SPOCTOPUS

http://octopus.cbr.su.se/index.php

TargetP

http://www.cbs.dtu.dk/services/TargetP/

Prediction of GO terms

GOPET

http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar

Pfam

http://pfam.sanger.ac.uk/

ProtFun 2.2

http://www.cbs.dtu.dk/services/ProtFun/

References

<references />