Sequence-based analyses of ARS A

Additional Proteins

The following proteins are additionally used for the prediction of transmembrand alpha-helices and signal peptides and for the prediction of GO Terms:

• BACR_HALSA
• RET4_HUMAN
• INSL5_HUMAN
• LAMP1_HUMAN
• A4_HUMAN

Secondary Structure Prediction

DSSP

• DSSP file of ARS A

Prediction of Disordered Regions

DISOPRED

• DISOPRED Server

POODLE

• POODLE Server

IUPRED

• IUPRED Server

Meta-Disorder

• PredictProtein Server

Prediction of transmembrane alpha-helices and signal peptides

SignalP

sudo /apps/signalp-3.0/signalp -t gram- ../BACR.fasta > BACR.signalp
sudo /apps/signalp-3.0/signalp -t euk ../ARSA.fasta > ARSA.signalp
sudo /apps/signalp-3.0/signalp -t euk ../A4.fasta > A4.signalp
sudo /apps/signalp-3.0/signalp -t euk ../LAMP1.fasta > LAMP1.signalp
sudo /apps/signalp-3.0/signalp -t euk ../INSL5.fasta > INSL5.signalp
sudo /apps/signalp-3.0/signalp -t euk ../RET4.fasta > RET4.signalp

Prediction of GO Terms

GOPET

• GOPET Server

Pfam

• Pfam Server

ProtFun 2.2

• ProtFun 2.2 Server