MD Mutation436
From Bioinformatikpedia
Contents
- 1 check the trajectory
- 2 Visualize in pymol
- 3 create a movie
- 4 energy calculations for pressure, temperature, potential and total energy
- 5 minimum distance between periodic boundary cells
- 6 RMSF for protein and C-alpha
- 7 Pymol analysis of average and bfactor
- 8 Radius of gyration
- 9 solvent accesible surface area
- 10 hydrogen-bonds
- 11 salt bridges
- 12 Ramachandran plot
- 13 RMSD matrix
check the trajectory
Visualize in pymol
create a movie
energy calculations for pressure, temperature, potential and total energy
minimum distance between periodic boundary cells
RMSF for protein and C-alpha
Pymol analysis of average and bfactor
Radius of gyration
solvent accesible surface area
hydrogen-bonds
salt bridges
Ramachandran plot
RMSD matrix
cluster analysis
internal RMSD
