Sequence-based mutation analysis HEXA/Mutation Summary

From Bioinformatikpedia
Revision as of 16:34, 23 June 2011 by Link (talk | contribs) (pysicochemical properities)

Visualisation of the mutations

SNP-id mutation codon picture original aa picture mutated aa combined picture
rs4777505 Asn -> Ser
Amino acid Asparagine
Amino acid Serine
Picture which visualize the mutation
rs121907979 Leu -> Arg
Amino acid Leucine
Amino acid Arginine
Picture which visualize the mutation
rs61731240 His -> Asp
Amino acid Histidine
Amino acid Aspartate
Picture which visualize the mutation
rs121907974 Phe -> Ser
Amino acid Phenylalanine
Amino acid Serine
Picture which visualize the mutation
rs61747114 Leu -> Phe
Amino acid Leucine
Amino acid Phenylalanine
Picture which visualize the mutation
rs1054374 Ser -> Ile
Amino acid Serine
Amino acid Isoleucine
Picture which visualize the mutation
rs121907967 Trp -> TER
Amino acid Tryptophan
Visualization of the mutated protein
rs1800430 Asn -> Asp
Amino acid Asparagine
Amino acid Aspartic acid
Picture which visualize the mutation
rs121907982 Ile -> Val
Amino acid Isoleucine
Amino acid Valin
Picture which visualize the mutation
rs121907968 Trp -> Arg
Amino acid Tryptophan
Amino acid Arginine
Picture which visualize the mutation

[Back to Sequence-based mutation analysis]

Substitutions Matrices

SNP-id mutation codon PAM 1 Pam 250 BLOSOUM 62
value aa most frequent substitution rarest substitution value aa most frequent substitution rarest substitution value aa most frequent substitution rarest substitution
rs4777505 Asn -> Ser 20 36 (Asp) 0 (Cys, Met) 5 7 (Asp) 2 (Cys, Leu, Phe, Trp) 1 1 (Asp, His, Ser) -4 (Trp)
rs121907979 Leu -> Arg 1 22 (Ile) 0 (Asp, Cys) 4 20 (Met) 2 (Cys) -2 0 (Phe) -4 (Asp, Gly)
rs61731240 His -> Asp 3 20 (Gln) 0 (Ile, Met) 4 7 (Gln) 2 (Ala, Cys, Gly, Ile, Leu, Met, Phe, Thr, Trp, Val) -1 2 (Tyr) -3 (Cys, Ile, Leu, Val)
rs121907974 Phe -> Ser 2 28 (Tyr) 0 (Asp, Cys, Glu, Lys, Pro, Val) 2 20 (Tyr) 1 (Arg, Asp, Cys, Gln, Glu, Gly, Lys, Pro) -2 3 (Tyr) -4 (Pro)
rs61747114 Leu -> Phe 13 45 (Met) 0 (Asp, Cys) 13 20 (Met) 2 (Cys) 0 2 (Ile, Met) -4 (Asp, Gly)
rs1054374 Ser -> Ile 2 38 (Thr) 1 (Leu) 5 9 (Ala, Gly, Pro, Thr) 3 (Phe) -2 1 (Ala, Asn, Thr) -3 (Trp)
rs121907967 Trp -> TER X 2 (Arg) 0 (all, except Arg, Phe, Ser, Tyr) X 2 (Arg) 0 (all, except Arg, His, Leu, Phe, Ser, Tyr) X 2 (Tyr) -4 (Asn, Asp, Pro)
rs1800430 Asn -> Asp 36 36 (Asp) 0 (Cys, Met) 7 7 (Asp) 2 (Cys, Leu, Phe, Trp) 1 1 (Asp, His, Ser) -4 (Trp)
rs121907982 Ile -> Val 33 33 (Val) 0 (Gly, Pro, Trp) 9 9 (Val) 1 (Trp) 3 3 (Val) -4 (Gly)
rs121907968 Trp -> Arg 2 2 (Arg) 0 (all, except Arg, Phe, Ser, Tyr) 2 2 (Arg) 0 (all, except Arg, His, Leu, Phe, Ser, Tyr) -3 2 (Tyr) -4 (Asn, Asp, Pro)

[Back to Sequence-based mutation analysis]