Reference Alignment BCKDHA

Alignment NP000700.1 and Uniprot

2. Program: needle
3. Rundate: Sat 18 Jun 2011 15:40:24
4. Commandline: needle
5. -auto
6. -stdout
7. -asequence emboss_needle-I20110618-154022-0862-15396676-pg.asequence
8. -bsequence emboss_needle-I20110618-154022-0862-15396676-pg.bsequence
9. -datafile EBLOSUM62
10. -gapopen 10.0
11. -gapextend 0.5
12. -endopen 10.0
13. -endextend 0.5
14. -aformat3 pair
15. -sprotein1
16. -sprotein2
17. Align_format: pair
18. Report_file: stdout

1. =======================================
3. Aligned_sequences: 2
4. 1: ODBA_HUMAN
5. 2: NP_000700.1
6. Matrix: EBLOSUM62
7. Gap_penalty: 10.0
8. Extend_penalty: 0.5
10. Length: 445
11. Identity: 445/445 (100.0%)
12. Similarity: 445/445 (100.0%)
13. Gaps: 0/445 ( 0.0%)
14. Score: 2348.0
17. =======================================

ODBA_HUMAN 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50

ODBA_HUMAN 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100

ODBA_HUMAN 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150

ODBA_HUMAN 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200

ODBA_HUMAN 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250

ODBA_HUMAN 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300

ODBA_HUMAN 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350

ODBA_HUMAN 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400

ODBA_HUMAN 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445

                    |||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445

1. ---------------------------------------
2. ---------------------------------------

Alignment NP000700.1 and NP_064543.3

1. Program: needle
2. Rundate: Sat 18 Jun 2011 15:33:48
3. Commandline: needle
4. -auto
5. -stdout
6. -asequence emboss_needle-I20110618-153347-0476-45685691-pg.asequence
7. -bsequence emboss_needle-I20110618-153347-0476-45685691-pg.bsequence
8. -datafile EBLOSUM62
9. -gapopen 10.0
10. -gapextend 0.5
11. -endopen 10.0
12. -endextend 0.5
13. -aformat3 pair
14. -sprotein1
15. -sprotein2
16. Align_format: pair
17. Report_file: stdout

1. =======================================
3. Aligned_sequences: 2
4. 1: NP_064543.3
5. 2: NP_000700.1
6. Matrix: EBLOSUM62
7. Gap_penalty: 10.0
8. Extend_penalty: 0.5
10. Length: 497
11. Identity: 49/497 ( 9.9%)
12. Similarity: 86/497 (17.3%)
13. Gaps: 314/497 (63.2%)
14. Score: 30.0
17. =======================================

NP_064543.3 1 -------------------------------------------------- 0

NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50

NP_064543.3 1 -------------------------------------------------- 0

NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100

NP_064543.3 1 -----------------------------------MEEETHTDAKIRAEN 15

                                                       .||.||.        

NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHV-------- 142

NP_064543.3 16 GTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK 65

                                               |||:.|. :|.::.|.|..|.|.

NP_000700.1 143 ---------------------------GSAAALD-NTDLVFGQYREAGVL 164

NP_064543.3 66 VSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE-------AVVLG 108

                    :.::.    .||:.:....|......|.|:..:...|:       :..|.

NP_000700.1 165 MYRDY----PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 210

NP_064543.3 109 TLHPRTSITVVLQVVSDAGSLLACCL--NAACMALVDAGVPMRA-LFCGV 155

                    |..|:..........::|..::.|..  .||......||....| |.|.:

NP_000700.1 211 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 260

NP_064543.3 156 ACALDSDGTLVLDPTSKQEK----EAR----AVLTFALDSVERKLLMSST 197

                    .....::|..:..|||:|.:    .||    .:::..:|..:...:.::|

NP_000700.1 261 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNAT 310

NP_064543.3 198 KGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR---YSKS--------- 235

                    |         :....|.|.:|   .|..|::..|   :|.|         

NP_000700.1 311 K---------EARRRAVAENQ---PFLIEAMTYRIGHHSTSDDSSAYRSV 348

NP_064543.3 236 -------------------------------------------------- 235

NP_000700.1 349 DEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 398

NP_064543.3 236 ----------------------------------------------- 235

NP_000700.1 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445

1. ---------------------------------------
2. ---------------------------------------

Alignment NM_000709.3 NP000700.1 (translated)

2. Program: needle
3. Rundate: Sat 18 Jun 2011 15:42:31
4. Commandline: needle
5. -auto
6. -stdout
7. -asequence emboss_needle-I20110618-154230-0254-14289745-pg.asequence
8. -bsequence emboss_needle-I20110618-154230-0254-14289745-pg.bsequence
9. -datafile EBLOSUM62
10. -gapopen 10.0
11. -gapextend 0.5
12. -endopen 10.0
13. -endextend 0.5
14. -aformat3 pair
15. -sprotein1
16. -sprotein2
17. Align_format: pair
18. Report_file: stdout

1. =======================================
3. Aligned_sequences: 2
4. 1: NP_000700.1
5. 2: EMBOSS_001
6. Matrix: EBLOSUM62
7. Gap_penalty: 10.0
8. Extend_penalty: 0.5
10. Length: 458
11. Identity: 445/458 (97.2%)
12. Similarity: 445/458 (97.2%)
13. Gaps: 13/458 ( 2.8%)
14. Score: 2348.0
17. =======================================

NP_000700.1 1 -------------MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 37

                                 |||||||||||||||||||||||||||||||||||||

EMBOSS_001 1 LRECRTAEWLLAKMAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 50

NP_000700.1 38 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 87

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 51 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 100

NP_000700.1 88 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 137

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 101 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 150

NP_000700.1 138 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 187

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 151 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 200

NP_000700.1 188 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 237

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 201 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 250

NP_000700.1 238 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 287

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 251 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 300

NP_000700.1 288 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 337

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 301 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 350

NP_000700.1 338 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 387

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 351 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 400

NP_000700.1 388 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 437

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 401 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 450

NP_000700.1 438 YPLDHFDK 445

                    ||||||||

EMBOSS_001 451 YPLDHFDK 458

1. ---------------------------------------
2. ---------------------------------------