Sequence-based predictions
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Contents
1
Sequence-based predictions
1.1
1. Secondary structure prediction
1.1.1
PSIPRED
1.1.2
Jpred3
1.1.3
Comparison with DSSP
1.2
2. Prediction of disordered regions
1.2.1
DISOPRED
1.2.2
POODLE
1.2.3
IUPRED
1.3
3. Prediction of transmembrane alpha-helices and signal peptides
1.3.1
TMHMM
1.3.2
Phobius and PolyPhobius
1.3.3
OCTOPUS and SPOCTOPUS
1.3.4
SignalP
1.3.5
TargetP
1.4
4. Prediction of GO terms
1.4.1
GOPET
1.4.2
Pfam
1.4.3
ProtFun 2.2
Sequence-based predictions
1. Secondary structure prediction
PSIPRED
Jpred3
Comparison with DSSP
2. Prediction of disordered regions
DISOPRED
POODLE
IUPRED
3. Prediction of transmembrane alpha-helices and signal peptides
TMHMM
Phobius and PolyPhobius
OCTOPUS and SPOCTOPUS
SignalP
TargetP
4. Prediction of GO terms
GOPET
Pfam
ProtFun 2.2
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