Normal Mode Analysis (PKU)

Short Task Description

This week, we will perform a normal mode analysis of our wildtype protein. We will calculate visualize large coordinate movements to identify e.g. domains and try to watch ligand interaction. For this, we will use the webnm@ and elNemo webservers. See the task description for details, a journal of commands and scripts, if necessary, can be found here.

BILDCHEN

Ah smells me a cheezburga!

<figure id="fig:mode7">

Animation of mode 7 from WEBnm@. Original pdb-structure is colored green. BH4 is colored yellow and the Fe2+ ion is colored in red. The mesh represents the model gained from WEBnm@.

</figure> <figure id="fig:mode8">

Animation of mode 8 from WEBnm@. Original pdb-structure is colored green. BH4 is colored yellow and the Fe2+ ion is colored in red. The mesh represents the model gained from WEBnm@.

</figure> <figure id="fig:mode9">

Animation of mode 9 from WEBnm@. Original pdb-structure is colored green. BH4 is colored yellow and the Fe2+ ion is colored in red. The mesh represents the model gained from WEBnm@.

</figure>