Sequence Alignments TSD
From Bioinformatikpedia
Sequence searches
There are several alignment methods provided by various initiatives, who tackle the problem of sequence searches. Here some of them are applied for the Hex A protein and analyzed. For the searches non redundant protein databases are used. The outputs are adapted to each other and put in comparison in order to determine the best results. A protocol containing the basic steps taken is available.
Blast
PSI-Blast
| Iterations | 2 | 2 | 10 | 10 |
|---|---|---|---|---|
| E-value | 0.002 | 10E-10 | 0.002 | 10E-10 |
| BIG80 | 3m53 | 4m3 | 18m57 | 21m9 |
| BIG | 17m19 | 11m13 | 16m39 | 11m13 |
Table 1: Different performances of PSI-Blast.
