Difference between revisions of "Seq.-based mut. analysis HEXA"
From Bioinformatikpedia
(→Mutations) |
(→Mutations) |
||
| Line 6: | Line 6: | ||
|mutation codon |
|mutation codon |
||
|mutation triplet |
|mutation triplet |
||
| + | |aa propensity |
||
| + | |consequences |
||
|- |
|- |
||
|rs1800428 |
|rs1800428 |
||
| Line 11: | Line 13: | ||
|Ser -> Ser |
|Ser -> Ser |
||
|AGC -> AGT |
|AGC -> AGT |
||
| + | |polar, tiny, hydroxylic -> polar, tiny, hydroxylic |
||
| + | | |
||
|- |
|- |
||
|rs121907979 |
|rs121907979 |
||
| Line 16: | Line 20: | ||
|Leu -> Arg |
|Leu -> Arg |
||
|CTT -> CGT |
|CTT -> CGT |
||
| + | |aliphatic, hydrophobic -> positive charged, polar |
||
| + | | |
||
|- |
|- |
||
|rs11551324 |
|rs11551324 |
||
| Line 21: | Line 27: | ||
|Thr -> Thr |
|Thr -> Thr |
||
|ACC -> ACT |
|ACC -> ACT |
||
| + | ||polar, small, hydroxylic, hydrophobic -> polar, small, hydroxylic, hydrophobic |
||
| + | | |
||
|- |
|- |
||
|rs61731240 |
|rs61731240 |
||
| Line 26: | Line 34: | ||
|His -> Asp |
|His -> Asp |
||
|CAT -> GAT |
|CAT -> GAT |
||
| + | |positive charged, polar -> negative charged, small, polar |
||
| + | | |
||
|- |
|- |
||
|rs121907974 |
|rs121907974 |
||
| Line 31: | Line 41: | ||
|Phe -> Ser |
|Phe -> Ser |
||
|TTC -> TCC |
|TTC -> TCC |
||
| + | |aromatic, hydrophobic -> polar, tiny, hydroxylic |
||
| + | | |
||
|- |
|- |
||
|rs1054374 |
|rs1054374 |
||
| Line 36: | Line 48: | ||
|Ser -> Ile |
|Ser -> Ile |
||
|AGT -> ATT |
|AGT -> ATT |
||
| + | |polar, tiny, hydroxylic -> aliphatic, hydrophobic |
||
| + | | |
||
|- |
|- |
||
|rs121907967 |
|rs121907967 |
||
| Line 41: | Line 55: | ||
|Trp -> TER |
|Trp -> TER |
||
|TGG -> TAG |
|TGG -> TAG |
||
| + | |aromatic, polar, hydrophobic -> TER |
||
| + | | |
||
|- |
|- |
||
|rs121907982 |
|rs121907982 |
||
| Line 46: | Line 62: | ||
|Tyr -> Ser |
|Tyr -> Ser |
||
|TAT -> TCT |
|TAT -> TCT |
||
| + | |aromatic, polar, hydrophobic -> polar, tiny, hydroxylic |
||
| + | | |
||
|- |
|- |
||
|rs121907968 |
|rs121907968 |
||
| Line 51: | Line 69: | ||
|Trp -> Arg |
|Trp -> Arg |
||
|gTGG -> CGG |
|gTGG -> CGG |
||
| + | |aromatic, polar, hydrophobic -> positive charged, polar |
||
| + | | |
||
|- |
|- |
||
|rs4777502 |
|rs4777502 |
||
| Line 56: | Line 76: | ||
|Glu -> Glu |
|Glu -> Glu |
||
|GAG -> GAA |
|GAG -> GAA |
||
| + | |negative charted, polar -> negative charged, polar |
||
| + | | |
||
|- |
|- |
||
|} |
|} |
||
Revision as of 13:50, 21 June 2011
Mutations
| SNP-id | codon number | mutation codon | mutation triplet | aa propensity | consequences |
| rs1800428 | 3 | Ser -> Ser | AGC -> AGT | polar, tiny, hydroxylic -> polar, tiny, hydroxylic | |
| rs121907979 | 39 | Leu -> Arg | CTT -> CGT | aliphatic, hydrophobic -> positive charged, polar | |
| rs11551324 | 109 | Thr -> Thr | ACC -> ACT | polar, small, hydroxylic, hydrophobic -> polar, small, hydroxylic, hydrophobic | |
| rs61731240 | 179 | His -> Asp | CAT -> GAT | positive charged, polar -> negative charged, small, polar | |
| rs121907974 | 211 | Phe -> Ser | TTC -> TCC | aromatic, hydrophobic -> polar, tiny, hydroxylic | |
| rs1054374 | 293 | Ser -> Ile | AGT -> ATT | polar, tiny, hydroxylic -> aliphatic, hydrophobic | |
| rs121907967 | 329 | Trp -> TER | TGG -> TAG | aromatic, polar, hydrophobic -> TER | |
| rs121907982 | 456 | Tyr -> Ser | TAT -> TCT | aromatic, polar, hydrophobic -> polar, tiny, hydroxylic | |
| rs121907968 | 485 | Trp -> Arg | gTGG -> CGG | aromatic, polar, hydrophobic -> positive charged, polar | |
| rs4777502 | 506 | Glu -> Glu | GAG -> GAA | negative charted, polar -> negative charged, polar |
