Difference between revisions of "Sequence-based mutation analysis of ARSA"
From Bioinformatikpedia
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| + | === SNAP === |
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| + | We ran snap using the following command: |
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| + | <code> |
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| + | snapfun -i ARSA.fasta -m mutants.txt -o snap.out |
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| + | </code> |
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Revision as of 14:19, 21 June 2011
Intro
| SNP type | mutation | position |
|---|---|---|
| missense | Asp-Asn | 29 |
| missense | Gln-His | 153 |
| missense | Thr-Met | 274 |
| missense | Thr-Ile | 409 |
| missense | Cys-Gly | 489 |
| synonymous | Asp [D]-Asp [D] | 381 |
| synonymous | Pro [P]-Pro [P] | 195 |
| synonymous | His [H]-His [H] | 151 |
| missense | Trp [W]-Cys [C] | 193 |
SNAP
We ran snap using the following command:
snapfun -i ARSA.fasta -m mutants.txt -o snap.out
