Difference between revisions of "Homology-modelling HEXA/swissmodel ali"
From Bioinformatikpedia
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Alignment of HEXA_HUMAN and 3CUI: |
Alignment of HEXA_HUMAN and 3CUI: |
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Alignment of HEXA_HUMAN and 3LUT: |
Alignment of HEXA_HUMAN and 3LUT: |
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sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529 |
sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529 |
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3LUT_A|PDBID|CHAIN|SEQUENCE ----------------------------- |
3LUT_A|PDBID|CHAIN|SEQUENCE ----------------------------- |
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| + | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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Revision as of 13:38, 12 June 2011
Alignment of HEXA_HUMAN and 3BC9:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN --------------------------MTSSRLWFSLLLAAAFAGRATALW 24
3BC9_A|PDBID|CHAIN|SEQUENCE GCSNISEDVNNPNRSLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQL 50
: *: .::* : . .:
sp|P06865|HEXA_HUMAN PWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCS---------VLDEAF 65
3BC9_A|PDBID|CHAIN|SEQUENCE ALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLSYEVIDIYDNHL 100
. .: : ** : : * : : . : :* *. : *: :
sp|P06865|HEXA_HUMAN QRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVEN 115
3BC9_A|PDBID|CHAIN|SEQUENCE QGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWN 150
* * ::*.....:*: .**: : . . ..: * .: *
sp|P06865|HEXA_HUMAN YTLTINDDQCLLLSETVWG--ALRGLETFSQLVWKS----AEGTFFIN-- 157
3BC9_A|PDBID|CHAIN|SEQUENCE LLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGT 200
: . :** * :*: : :: : : * * :
sp|P06865|HEXA_HUMAN -KTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLV 206
3BC9_A|PDBID|CHAIN|SEQUENCE VRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSR 250
:*: .: : *... : :.::*: * : ::. :
sp|P06865|HEXA_HUMAN DDPSFPYESFT-FPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 255
3BC9_A|PDBID|CHAIN|SEQUENCE DKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFD 300
*.*. :::* * *:*.*. .* . * .: :*:: * ::
sp|P06865|HEXA_HUMAN EFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFF 305
3BC9_A|PDBID|CHAIN|SEQUENCE E-KSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDG-FR 348
* .: . * .*. . *... .. . . : *. :* . *
sp|P06865|HEXA_HUMAN LEVSSVFPDFYLHLGGDEVDFTCWK-----SNPEIQDFMRKKGFGEDFK- 349
3BC9_A|PDBID|CHAIN|SEQUENCE LDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGN 398
*:. . : ::. . *: :. : .:. ::*. *** : .
sp|P06865|HEXA_HUMAN ----------------QLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKI 383
3BC9_A|PDBID|CHAIN|SEQUENCE PDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDT 448
*:. *: * : . ** .* :: .
sp|P06865|HEXA_HUMAN QPDTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKD 433
3BC9_A|PDBID|CHAIN|SEQUENCE DRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KL 497
: * . *. *. :: :*: .:. * * *
sp|P06865|HEXA_HUMAN FYIVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAER 483
3BC9_A|PDBID|CHAIN|SEQUENCE LTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVLMISDGTSGNV 547
: . *: * . . : : . : * :. * *: .:
sp|P06865|HEXA_HUMAN LWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT---- 529
3BC9_A|PDBID|CHAIN|SEQUENCE AGKINSRQPDTEFYDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPV 597
. : . * *: .*:: .: . ::* .*:: .
sp|P06865|HEXA_HUMAN -
3BC9_A|PDBID|CHAIN|SEQUENCE E 598
Back to [Homology Modelling]
Alignment of HEXA_HUMAN and 3CUI:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYDV 50
3CUI_A|PDBID|CHAIN|SEQUENCE --------ATTLKEAADG------------AGRDFGFALDPN-------- 22
: * * * * :.* **
sp|P06865|HEXA_HUMAN SSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVV 100
3CUI_A|PDBID|CHAIN|SEQUENCE --------RLSEAQYKAIADSEFN-------------LVVAENAMKWDAT 51
: : :: * *. .: :*.: ...
sp|P06865|HEXA_HUMAN TPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSA 150
3CUI_A|PDBID|CHAIN|SEQUENCE EPSQNSFS------------------------FGAGDRVASYAADTGKEL 77
*. *.:. :** : ::: . *.
sp|P06865|HEXA_HUMAN EGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNV 200
3CUI_A|PDBID|CHAIN|SEQUENCE YGHTLVWHSQLPDWAKN----------------------LNGSAFESAMV 105
* :: :::: *:.: *: *::. *
sp|P06865|HEXA_HUMAN FHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRG 250
3CUI_A|PDBID|CHAIN|SEQUENCE NHVTKVAD------------------------------------------ 113
* * *
sp|P06865|HEXA_HUMAN IRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEF 300
3CUI_A|PDBID|CHAIN|SEQUENCE -------HFEGKVASWD-----VVNEAFADGGGRRQDSAFQQKLGN--GY 149
. *:. **. ::. .::.. ...: .*.* :
sp|P06865|HEXA_HUMAN MSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQ 350
3CUI_A|PDBID|CHAIN|SEQUENCE IETAFRAARAADPTAKLCINDYNVEGINAKSNS-LYDLVKD--FKARGVP 196
:.* * . :. * * :.. :*: ***. : *:::. *
sp|P06865|HEXA_HUMAN LESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNY 400
3CUI_A|PDBID|CHAIN|SEQUENCE LDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVR---------------- 230
*:.. :*: * : . *. *.. * *.::
sp|P06865|HEXA_HUMAN MKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKA 450
3CUI_A|PDBID|CHAIN|SEQUENCE ITELDIRMRTPS----------DATKLATQAADYKKVVQACMQVTRCQGV 270
:.**:: :: : . ..: *: * .:: * * .
sp|P06865|HEXA_HUMAN LVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERL 500
3CUI_A|PDBID|CHAIN|SEQUENCE TVWG--------ITDKYSWVPDVFP--GEGAALVWD--------ASYAKK 302
* * .*: . ** ::* * * :*. :* :
sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529
3CUI_A|PDBID|CHAIN|SEQUENCE PAYAAVMEAFGAS---------------- 315
. : . : *..
Back to [Homology Modelling]
Alignment of HEXA_HUMAN and 3LUT:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYDV 50
3LUT_A|PDBID|CHAIN|SEQUENCE ---------------MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQ 35
: .:*: * .:: :.. ::*...:
sp|P06865|HEXA_HUMAN SSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVV 100
3LUT_A|PDBID|CHAIN|SEQUENCE LQFYR------NLGKSGLRVSCLGLGTWVT--FGGQITDEMAEHLMTLAY 77
. : : . . * :* *:* : *: : *:. .
sp|P06865|HEXA_HUMAN TPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSA 150
3LUT_A|PDBID|CHAIN|SEQUENCE DNGINLFDTAEVYAAG-----------KAEVVLGNIIKKKGWRRSSLVIT 116
* * : * * :*.* * : : : : :
sp|P06865|HEXA_HUMAN EGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNV 200
3LUT_A|PDBID|CHAIN|SEQUENCE TKIFWGGKAETERG---LSRKHIIEGLKASLER-LQLEYVDVVFANRP-- 160
*: .*:* * * ::: : * *: :**: *:
sp|P06865|HEXA_HUMAN FHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRG 250
3LUT_A|PDBID|CHAIN|SEQUENCE -------DPNTPMEET---------------------------------- 169
**. * *.
sp|P06865|HEXA_HUMAN IRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEF 300
3LUT_A|PDBID|CHAIN|SEQUENCE VRAMTHVINQGMAMYWG-----------------------------TSRW 190
:*.::.. . * :: ** * .:
sp|P06865|HEXA_HUMAN MSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQ 350
3LUT_A|PDBID|CHAIN|SEQUENCE SSMEIMEAYSVARQFNLIPP--------ICEQAEYHMFQREK-------- 224
* ::*. ** :* * .:.* : * *:*
sp|P06865|HEXA_HUMAN LESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNY 400
3LUT_A|PDBID|CHAIN|SEQUENCE ----VEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGY 270
* ::. . * * :.*. : . *. : *: * : . .*
sp|P06865|HEXA_HUMAN MKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKA 450
3LUT_A|PDBID|CHAIN|SEQUENCE QWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSV 320
: : . * : *: *: . . :. . .:.. ...
sp|P06865|HEXA_HUMAN LVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERL 500
3LUT_A|PDBID|CHAIN|SEQUENCE LLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYRS--- 367
*: ..:* * :. :::*:* . : : .** *. :
sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529
3LUT_A|PDBID|CHAIN|SEQUENCE -----------------------------
Back to [Homology Modelling]
