Difference between revisions of "Homology based structure predictions"
From Bioinformatikpedia
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== SwissModel == |
== SwissModel == |
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| − | The model created by SwissModel is based on a self hit, but we had no |
+ | The model created by SwissModel is based on a self hit, but we had no chance to exclude the protein itself from the prediction. Therefore we also run SwissModel in Alignment-Mode.(TODO) |
| + | ===Automated Mode=== |
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[[Image:16az.jpg|thumb| predicted model]] |
[[Image:16az.jpg|thumb| predicted model]] |
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|[[Image:QMEAN_plots_energy_profile_plots_Batch.1.short.pdb_local_energy_profile_QMEANlocal.png|thumb|predicted error]] |
|[[Image:QMEAN_plots_energy_profile_plots_Batch.1.short.pdb_local_energy_profile_QMEANlocal.png|thumb|predicted error]] |
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| + | ===Alignment Mode=== |
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== Modeller == |
== Modeller == |
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Revision as of 16:06, 7 June 2011
Contents
Homologous
| PDB-ID | Identity | Description |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
ITasser
SwissModel
The model created by SwissModel is based on a self hit, but we had no chance to exclude the protein itself from the prediction. Therefore we also run SwissModel in Alignment-Mode.(TODO)
Automated Mode
Model information:
Modelled residue range: 26 to 297
Based on template: 1a6zC (2.60 Å)
Sequence Identity [%]: 100
Evalue: 7.66e-163
Quality information:
QMEAN Z-Score: -1.035
