Lab journal task 4

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The following four alignment methods were used:

LGA:

• superimpose to target structure (second structure, inour case 1A6Z )
• default parameters

SSAP:

• no target structure to specify
• no parameters to set
• score from 0 to 100

number of alignet residues per pair 1DE4_A 1QVO_A 1S7X_A 1JFM_A 2IA1_A 3NCI_A 1VZY_A 1MUS_A

method name	location
LGA	http://proteinmodel.org/AS2TS/LGA/lga.html
SSAP	http://protein.hbu.cn/cath/cathwww.biochem.ucl.ac.uk/cgi-bin/cath/GetSsapRasmol.html
TopMatch	https://topmatch.services.came.sbg.ac.at/
CE	http://source.rcsb.org/jfatcatserver/index.jsp