Difference between revisions of "Lab journal task 4"

From Bioinformatikpedia
Line 39: Line 39:
   
 
LGA: <br>
 
LGA: <br>
*superimpose to target structure (second structure, inour case 1A6Z )
+
#superimpose to target structure (second structure, inour case 1A6Z )
*default parameters
+
#default parameters
   
 
number of alignet residues per pair
 
number of alignet residues per pair

Revision as of 15:40, 9 August 2013

<css> table.colBasic2 { margin-left: auto; margin-right: auto; border: 2px solid black; border-collapse:collapse; width: 70%; }

.colBasic2 th,td { padding: 3px; border: 2px solid black; }

.colBasic2 td { text-align:left; }

.colBasic2 tr th { background-color:#efefef; color: black;} .colBasic2 tr:first-child th { background-color:#adceff; color:black;}

</css>


The following four alignment methods were used:

LGA:
#superimpose to target structure (second structure, inour case 1A6Z ) #default parameters number of alignet residues per pair 1DE4_A 1QVO_A 1S7X_A 1JFM_A 2IA1_A 3NCI_A 1VZY_A 1MUS_A
method name location
LGA http://proteinmodel.org/AS2TS/LGA/lga.html
SSAP http://protein.hbu.cn/cath/cathwww.biochem.ucl.ac.uk/cgi-bin/cath/GetSsapRasmol.html
TopMatch https://topmatch.services.came.sbg.ac.at/
CE http://source.rcsb.org/jfatcatserver/index.jsp