Difference between revisions of "Lab journal task 4"

From Bioinformatikpedia
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LGA: <br>
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-superimpose to target structure (second structure, inour case 1A6Z )
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-default parameters
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number of alignet residues per pair
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1DE4_A
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1QVO_A
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1S7X_A
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1JFM_A
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2IA1_A
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3NCI_A
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1VZY_A
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1MUS_A

Revision as of 15:40, 9 August 2013

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The following four alignment methods were used:

LGA:
-superimpose to target structure (second structure, inour case 1A6Z ) -default parameters number of alignet residues per pair 1DE4_A 1QVO_A 1S7X_A 1JFM_A 2IA1_A 3NCI_A 1VZY_A 1MUS_A
method name location
LGA http://proteinmodel.org/AS2TS/LGA/lga.html
SSAP http://protein.hbu.cn/cath/cathwww.biochem.ucl.ac.uk/cgi-bin/cath/GetSsapRasmol.html
TopMatch https://topmatch.services.came.sbg.ac.at/
CE http://source.rcsb.org/jfatcatserver/index.jsp