Difference between revisions of "Sequence-based mutation analysis (Phenylketonuria)"

Revision as of 18:34, 25 June 2013

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For the generation of the mutation dataset the following five SNPs from the HGMD database were used (25th June 2013): <figtable id="mutds_hgmd">

Missense mutations (SNPs) from HGMD
Accession Number	Codon change	Sequence position	Amino acid change	Codon number	Disease	Reference
CM000542	CAG⇒CTG	59	Gln(Q)-Leu(L)	20	Hyperphenylalaninaemia	Hennermann (2000) Hum Mutat 15, 254
CM045080	GGT⇒AGT	307	Gly(G)-Ser(S)	103	Phenylketonuria	Lee (2004) J Hum Genet 49, 617
CM910286	GCC⇒GTC	776	Ala(A)-Val(V)	259	Phenylketonuria	Labrune (1991) Am J Hum Genet 48, 1115
CM010981	AAG⇒ACG	1022	Lys(K)-Thr(T)	341	Phenylketonuria	Tyfield (1997) Am J Hum Genet 60, 388
CM090791	CCA⇒CAA	1247	Pro(P)-Gln(Q)	416	Hyperphenylalaninaemia	Dobrowolski (2009) J Inherit Metab Dis 32, 10

</figtable>

Furthermore, the following five mutations from dbSNP were added (25th June 2013): <figtable id="mutds_dbSNP">

Missense mutations (SNPs) from dbSNP
Reference SNP	Codon change	Sequence position	Amino acid change	Codon number	Disease
rs199475569	CAC⇒AAC	190	His(H)-Asn(N)	64	?
rs62508752	ACA⇒CCA	796	Thr(T)-Ala(A)	266	Phenylketonuria
rs184148104	CAA⇒GAA	1123	Gln(Q)-Glu(E)	375	?
rs199475695	TTT⇒TCT	1175	Phe(F)-Ser(S)	392	?
rs199475696	ATT⇒ACT	1262	Ile(I)-Thr(T)	421	?

</figtable>

@@ Line 52: / Line 52: @@
 | [http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=199475695 rs199475695] || T<span style="background:#00FF00">T</span>T⇒T<span style="background:#00FF00">C</span>T || 1175 || Phe(F)-Ser(S) || 392 || ?
 |-
+| [http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=199475696 rs199475696] || A<span style="background:#00FF00">T</span>T⇒A<span style="background:#00FF00">C</span>T || 1262 || Ile(I)-Thr(T) || 421 || ?
-| x || x || x || x || x || x
 |}
 </figtable>