Difference between revisions of "Structural Alignments (Phenylketonuria)"
From Bioinformatikpedia
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=== SSAP / CATHEDRAL (used by CATH) === |
=== SSAP / CATHEDRAL (used by CATH) === |
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| + | [http://v3-4.cathdb.info/cgi-bin/GetSsapRasmol.pl SSAP] |
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=== Topmatch === |
=== Topmatch === |
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| + | [https://topmatch.services.came.sbg.ac.at/ topmatch] |
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Revision as of 11:18, 29 May 2013
Contents
Summary
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Explore structural alignments
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Dataset generation
Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase)
- reference structure of PAH: 2PAH (96,41% identity)
- identical sequence with filled binding site: 1LRM (--> pdb entry: looked at 3D structure and saw a filled binding site, two ligands: FE and HBI)
- identical sequence with unfilled binding site: not found anyone
- low sequence identity: 3LUY (32,2% - no pdb ID under 30%)
- high sequence identity: pdb ID: 2PHM (89,7%)
- CAT: 1J8U (CATH Code: 1.10.800.10) - there is no other category than 1.10.800.10 for CAT
- CA: 2B5U (CATH Code: 1.10.287.620)
- C: 3BQO (CATH Code: 1.25.40.210)
- other CATH category: 1V8H (CATH Code: 2.60.40.10)
Pymol
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LGA
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SSAP / CATHEDRAL (used by CATH)
SSAP ...
Topmatch
topmatch ...
SAP or CE
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Modelling scores
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Evaluate sequence alignments
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References
<references/>
