Difference between revisions of "Structural Alignments (Phenylketonuria)"
From Bioinformatikpedia
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=== Dataset generation === |
=== Dataset generation === |
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| − | Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase) |
+ | Our protein has the CATH Code: [http://www.cathdb.info/version/3.5.0/superfamily/1.10.800.10 1.10.800.10] (Phenylalanine Hydroxylase) |
* reference structure of PAH: [http://www.rcsb.org/pdb/explore/explore.do?structureId=2PAH 2PAH] (96,41% identity) |
* reference structure of PAH: [http://www.rcsb.org/pdb/explore/explore.do?structureId=2PAH 2PAH] (96,41% identity) |
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* identical sequence with filled binding site: [http://www.rcsb.org/pdb/explore/explore.do?structureId=1LRM 1LRM] (--> pdb entry: looked at 3D structure and saw a filled binding site, two ligands: FE and HBI) |
* identical sequence with filled binding site: [http://www.rcsb.org/pdb/explore/explore.do?structureId=1LRM 1LRM] (--> pdb entry: looked at 3D structure and saw a filled binding site, two ligands: FE and HBI) |
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Revision as of 16:12, 28 May 2013
Contents
Summary
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Explore structural alignments
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Dataset generation
Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase)
- reference structure of PAH: 2PAH (96,41% identity)
- identical sequence with filled binding site: 1LRM (--> pdb entry: looked at 3D structure and saw a filled binding site, two ligands: FE and HBI)
- identical sequence with unfilled binding site:
- low sequence identity: 3LUY (32,2% - no pdb ID under 30%)
- high sequence identity: pdb ID: 2PHM (89,7%)
- CAT: 1J8U (CATH Code: 1.10.800.10) - there is no other category than 1.10.800.10 for CAT
- CA: 2B5U (CATH Code: 1.10.287.620)
- C: 3BQO (CATH Code: 1.25.40.210)
- other CATH category: 1V8H (CATH Code: 2.60.40.10)
Pymol
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LGA
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SSAP / CATHEDRAL (used by CATH)
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Topmatch
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SAP or CE
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Modelling scores
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Evaluate sequence alignments
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References
<references/>
