Difference between revisions of "Structural Alignments (Phenylketonuria)"
From Bioinformatikpedia
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=== Dataset generation === |
=== Dataset generation === |
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Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase) |
Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase) |
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| − | * reference structure of PAH: 2PAH (96, |
+ | * reference structure of PAH: 2PAH (96,41% identity) |
| − | * identical |
+ | * identical sequence with filled binding site: |
* identical sequence wit unfilled binding site: |
* identical sequence wit unfilled binding site: |
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* low sequence identity: 3LUY (32,2%) |
* low sequence identity: 3LUY (32,2%) |
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* high sequence identity: pdb ID: 2PHM (89,7%) |
* high sequence identity: pdb ID: 2PHM (89,7%) |
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| − | * CAT: 1J8U (1.10.800.10) - there is no other category than 1.10.800.10 for CAT |
+ | * CAT: 1J8U (CATH Code: 1.10.800.10) - there is no other category than 1.10.800.10 for CAT |
| − | * CA: 2B5U (1.10.287.620) |
+ | * CA: 2B5U (CATH Code: 1.10.287.620) |
| − | * C: 3BQO (1.25.40.210) |
+ | * C: 3BQO (CATH Code: 1.25.40.210) |
| − | * other CATH category: 1V8Hs (2.60.40.10) |
+ | * other CATH category: 1V8Hs (CATH Code: 2.60.40.10) |
=== Pymol === |
=== Pymol === |
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Revision as of 13:58, 28 May 2013
Contents
Summary
...
Explore structural alignments
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Dataset generation
Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase)
- reference structure of PAH: 2PAH (96,41% identity)
- identical sequence with filled binding site:
- identical sequence wit unfilled binding site:
- low sequence identity: 3LUY (32,2%)
- high sequence identity: pdb ID: 2PHM (89,7%)
- CAT: 1J8U (CATH Code: 1.10.800.10) - there is no other category than 1.10.800.10 for CAT
- CA: 2B5U (CATH Code: 1.10.287.620)
- C: 3BQO (CATH Code: 1.25.40.210)
- other CATH category: 1V8Hs (CATH Code: 2.60.40.10)
Pymol
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LGA
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SSAP / CATHEDRAL (used by CATH)
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Topmatch
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SAP or CE
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Modelling scores
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Evaluate sequence alignments
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References
<references/>
