Difference between revisions of "Structural Alignments (Phenylketonuria)"

From Bioinformatikpedia
(Dataset generation)
(Dataset generation)
Line 10: Line 10:
 
* CA: 1.10.287.620 (pdb ID: 2B5U)
 
* CA: 1.10.287.620 (pdb ID: 2B5U)
 
* C: 1.25.40.210 (pdb ID: 3BQO)
 
* C: 1.25.40.210 (pdb ID: 3BQO)
  +
* other CATH category: 2.60.40.10 (pdb ID: 1V8Hs)
   
 
=== Pymol ===
 
=== Pymol ===

Revision as of 14:48, 28 May 2013

Summary

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Explore structural alignments

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Dataset generation

Our protein has the CATH Code: 1.10.800.10 (Phenylalanine Hydroxylase)

  • CAT: 1.10.800.10 (pdb ID: 1J8U) - there is no other category than 1.10.800.10 for CAT
  • CA: 1.10.287.620 (pdb ID: 2B5U)
  • C: 1.25.40.210 (pdb ID: 3BQO)
  • other CATH category: 2.60.40.10 (pdb ID: 1V8Hs)

Pymol

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LGA

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SSAP / CATHEDRAL (used by CATH)

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Topmatch

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SAP or CE

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Modelling scores

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Evaluate sequence alignments

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References

<references/>