Difference between revisions of "Tastk 2: Alignments"
From Bioinformatikpedia
| Line 2: | Line 2: | ||
TODO: |
TODO: |
||
what blast parameters should be used? |
what blast parameters should be used? |
||
| + | |||
| + | Blast:<br> |
||
| + | |||
| + | |||
HHblits parameter:<br> |
HHblits parameter:<br> |
||
Revision as of 21:47, 3 May 2013
Sequence Searches
TODO: what blast parameters should be used?
Blast:
HHblits parameter:
hhblits -i /mnt/home/student/betza/data/hfe.fasta -d /mnt/project/rost_db/data/hhblits/uniprot20_02Sep11 -o /mnt/home/student/betza/task2/hfe.hhr -oa3m /mnt/home/student/betza/task2/hfe.a3m -oalis /mnt/home/student/betza/task2/hfe -ohhm /mnt/home/student/betza/task2/hfe.hhm
