Difference between revisions of "MD simulation analysis TSD Journal"
From Bioinformatikpedia
| Line 10: | Line 10: | ||
Additionally the data for the background distribution was loaded from [http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/ramachandran/#downloads|here].<br> |
Additionally the data for the background distribution was loaded from [http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/ramachandran/#downloads|here].<br> |
||
Then the scipt [https://gist.github.com/3557539|draw_rama.R] was called. |
Then the scipt [https://gist.github.com/3557539|draw_rama.R] was called. |
||
| + | |||
| + | |||
| + | =Signifikance calculation= |
||
| + | The p-value was computed with the script statTD.pl. |
||
Revision as of 21:12, 31 August 2012
Back to results.
Ramachandran plots
At first the .xvg files were parsed into the following format:
ID Psi Phi Aa 1HMP:chain0:Pro5 -92.926842 12.941312 Proline 1HMP:chain0:Gly6 65.796807 -162.229709 Glycine 1HMP:chain0:Val7 -81.132082 121.413022 General
Additionally the data for the background distribution was loaded from [1].
Then the scipt [2] was called.
Signifikance calculation
The p-value was computed with the script statTD.pl.
