Difference between revisions of "Sequence-based predictions"

From Bioinformatikpedia
(GOPET)
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|GO:0004872 || F || 91% || receptor activity
 
|GO:0004872 || F || 91% || receptor activity
 
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GO:0030106 || F || 88% || MHC class I receptor activity
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|GO:0030106 || F || 88% || MHC class I receptor activity
 
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Revision as of 15:05, 31 May 2011

Sequence-based predictions

1. Secondary structure prediction

PSIPRED

Jpred3

Comparison with DSSP

2. Prediction of disordered regions

DISOPRED

POODLE

IUPRED

3. Prediction of transmembrane alpha-helices and signal peptides

TMHMM

Phobius and PolyPhobius

OCTOPUS and SPOCTOPUS

SignalP

TargetP

4. Prediction of GO terms

GOPET

GOID Aspect Confidence GO Term
GO:0004872 F 91% receptor activity
GO:0030106 F 88% MHC class I receptor activity

Pfam

ProtFun 2.2