Difference between revisions of "Sequence-based predictions"
From Bioinformatikpedia
(→Sequence-based predictions) |
(→GOPET) |
||
| Line 17: | Line 17: | ||
==4. Prediction of GO terms== |
==4. Prediction of GO terms== |
||
===GOPET=== |
===GOPET=== |
||
| + | |||
| + | |||
| + | {| border="1" style="text-align:center; border-spacing:0;" |
||
| + | !GOID |
||
| + | !Aspect |
||
| + | !Confidence |
||
| + | !GO Term |
||
| + | |- |
||
| + | |GO:0004872 || F || 91% || receptor activity |
||
| + | |- |
||
| + | GO:0030106 || F || 88% || MHC class I receptor activity |
||
| + | |- |
||
| + | |} |
||
| + | |||
===Pfam=== |
===Pfam=== |
||
===ProtFun 2.2=== |
===ProtFun 2.2=== |
||
Revision as of 14:04, 31 May 2011
Contents
Sequence-based predictions
1. Secondary structure prediction
PSIPRED
Jpred3
Comparison with DSSP
2. Prediction of disordered regions
DISOPRED
POODLE
IUPRED
3. Prediction of transmembrane alpha-helices and signal peptides
TMHMM
Phobius and PolyPhobius
OCTOPUS and SPOCTOPUS
SignalP
TargetP
4. Prediction of GO terms
GOPET
GO:0030106 || F || 88% || MHC class I receptor activity| GOID | Aspect | Confidence | GO Term |
|---|---|---|---|
| GO:0004872 | F | 91% | receptor activity |
