Difference between revisions of "CD task10 protocol"

From Bioinformatikpedia
(Pymol visualisation)
(Pymol visualisation)
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mencoder "mf://*.png" -mf w=640:h=480:type=png -ofps 25 -ovc lavc -lavcopts vcodec=mpeg4:vpass=1:vbitrate=5000000:mbd=2:keyint=132:v4mv:vqmin=3:lumi_mask=0.07:dark_mask=0.2:scplx_mask=0.1:tcplx_mask=0.1:naq -o wt_movie4.avi
+
mencoder "mf://*.png" -mf w=640:h=480:type=png -ofps 25 -ovc lavc
  +
-lavcopts vcodec=mpeg4:vpass=1:vbitrate=5000000:mbd=2:keyint=132:v4mv:vqmin=3:lumi_mask=0.07:dark_mask=0.2:scplx_mask=0.1:tcplx_mask=0.1:naq
  +
-o wt_movie4.avi

Revision as of 09:59, 9 July 2012



Script with all analysis steps

In this script, all the required commands for the analysis methods are listed.

analysis.sh

Pymol visualisation

simple Pymol visalization script

create_pymol_vis.py


mencoder "mf://*.png" -mf w=640:h=480:type=png -ofps 25 -ovc lavc 
-lavcopts vcodec=mpeg4:vpass=1:vbitrate=5000000:mbd=2:keyint=132:v4mv:vqmin=3:lumi_mask=0.07:dark_mask=0.2:scplx_mask=0.1:tcplx_mask=0.1:naq
-o wt_movie4.avi