Difference between revisions of "Normal mode analysis Gaucher Disease"

From Bioinformatikpedia
(→‎WEBnm@)
(→‎Deformation Energies)
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=== Deformation Energies ===
  
=== Deformation Energies ===
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"Deformation energies and eigenvalues reflect the energy associated with each mode and are inversely related to the amplitude of the motion described by a the corresponding modes. The protein structure moves along all the normal modes at once. A mode should only be interpreted in isolation if it is energetically well separated from other modes. " - from Webnma@
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Below are the values of the deformation energy for modes 7 to 20.
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<figtable id="tab:defor_enery">
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{| style="border-collapse: separate; border-style: solid; border-spacing: 0; border-width: 2px 0 2px 0; text-align:center" width="400px"
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|- style="background-color: lightgrey"
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! Mode Index !! Deformation Energy !! Mode Index !! Deformation Energy
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|-
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| colspan=6 style="border-collapse: separate; border-style: solid; border-spacing: 0; border-width: 1px 0 0 0"|
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|-
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|7 || 1663.91 || 14 || 6698.31
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|-
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| 8 || 2377.48 || 15 || 9791.69
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|-
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| 9 || 2720.71 || 16 || 9534.10
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|-
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| 10 || 5191.86 || 17 || 10022.74
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|-
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| 11 || 5033.67 || 18 || 11137.44
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|-
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| 12 || 6174.70 || 19 || 11592.80
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|-
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| 13 || 6360.72 || 20 || 12045.03
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|}
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<caption>The deformation energy for modes 7 to 20 from Webnma@.</caption>
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</figtable>
   
 
=== Atomic Displacement ===
  
=== Atomic Displacement ===

Revision as of 02:19, 7 July 2012

Introduction

Technical details are reported in our protocol

WEBnm@

Deformation Energies

"Deformation energies and eigenvalues reflect the energy associated with each mode and are inversely related to the amplitude of the motion described by a the corresponding modes. The protein structure moves along all the normal modes at once. A mode should only be interpreted in isolation if it is energetically well separated from other modes. " - from Webnma@

Below are the values of the deformation energy for modes 7 to 20.

<figtable id="tab:defor_enery">

Mode Index Deformation Energy Mode Index Deformation Energy
7 1663.91 14 6698.31
8 2377.48 15 9791.69
9 2720.71 16 9534.10
10 5191.86 17 10022.74
11 5033.67 18 11137.44
12 6174.70 19 11592.80
13 6360.72 20 12045.03

The deformation energy for modes 7 to 20 from Webnma@. </figtable>

Atomic Displacement

Correlation Matrix

Mode Visualization

ElNemo

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