Difference between revisions of "Normal Mode Analysis (PKU)"
From Bioinformatikpedia
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This week, we will perform a normal mode analysis of our wildtype protein. We will calculate visualize large coordinate movements to identify e.g. domains and try to watch ligand interaction. For this, we will use the [http://apps.cbu.uib.no/webnma/home webnm@] and [http://www.igs.cnrs-mrs.fr/elnemo/start.html elNemo] webservers. See the [[Task_9_-_Normal_Mode_Analysis|task description]] for details, a journal of commands and scripts, if necessary, can be found [[Task_9_-_Journal_(PKU)|here]]. |
This week, we will perform a normal mode analysis of our wildtype protein. We will calculate visualize large coordinate movements to identify e.g. domains and try to watch ligand interaction. For this, we will use the [http://apps.cbu.uib.no/webnma/home webnm@] and [http://www.igs.cnrs-mrs.fr/elnemo/start.html elNemo] webservers. See the [[Task_9_-_Normal_Mode_Analysis|task description]] for details, a journal of commands and scripts, if necessary, can be found [[Task_9_-_Journal_(PKU)|here]]. |
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| + | == BILDCHEN == |
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| + | Ah smells me a cheezburga! |
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| + | <figure id="fig:mode7"> |
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| + | [[File:mode7pkuanimated.gif|thumb|500px|<caption>Animation of mode 7 from WEBnm@. Original pdb-structure is colored green. BH4 is colored yellow and the Fe2+ ion is colored in red. The mesh represents the model gained from WEBnm@. |
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| + | </figure> |
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Revision as of 13:33, 5 July 2012
Short Task Description
This week, we will perform a normal mode analysis of our wildtype protein. We will calculate visualize large coordinate movements to identify e.g. domains and try to watch ligand interaction. For this, we will use the webnm@ and elNemo webservers. See the task description for details, a journal of commands and scripts, if necessary, can be found here.
BILDCHEN
Ah smells me a cheezburga!
<figure id="fig:mode7"> [[File:mode7pkuanimated.gif|thumb|500px|Animation of mode 7 from WEBnm@. Original pdb-structure is colored green. BH4 is colored yellow and the Fe2+ ion is colored in red. The mesh represents the model gained from WEBnm@. </figure>
