Difference between revisions of "MSUP-task7-journal"
From Bioinformatikpedia
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sequence mutated: |
sequence mutated: |
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| + | kpqfpgasaefidklefiqpSvisgipiyrvIdrqgqiinpsedphlpkekvlklyksmtll |
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| − | kpqfpgasaefidklefiqpnSvisgipiyrvmIdrqgqiinpsedphlpkekvlkly |
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| + | ntmdrilyesqrEgrisfymtnygegtvgsaaaldntdlvfgareagvlmyrdyplelfmaq |
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| − | ksmtllntmdrilyesqrqEgrisfymtnygegtvgsaaaldntdlvfgareagvlmy |
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| + | cygnisdlgkgrqpvygckerhfvtissplatqTpqavgaayaakrananrvvicyfgegaa |
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| − | rdyplelfmaqcygnisdlgkgrqpvygckerhfvtissplatqaTpqavgaayaakr |
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| + | segdahagfnfaatleYpiiffcrnngyaistptseqyrgdgiaargpgygimsirvdgndv |
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| − | ananrvvicyfgegaasegdahagfnfaatlecYpiiffcrnngyaistptseqyrgd |
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| + | favynaRkearrravaenqpflieTmtyrigstdhpVsrlrhylqgwwdeeqekawrkqsrr |
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| − | giaargpgygimsirvdgndvfavynatRkearrravaenqpflieaTmtyrigstdh |
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| + | kvmeafeqaerkpkpSpnllfsdvyqempaqlrkqqeslaHhlqtygehypldhfdk |
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| − | piVsrlrhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpnSpnllfsdvyqemp |
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| − | aqlrkqqeslarHhlqtygehypldhfdK |
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| − | |||
posmap: |
posmap: |
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Revision as of 16:03, 21 June 2012
Scwrl
Sequence extraction from pdb-file:
/opt/SS12-Practical/scripts/repairPDB 2bfd_A.ent -chain A -seq
sequence mutated: kpqfpgasaefidklefiqpSvisgipiyrvIdrqgqiinpsedphlpkekvlklyksmtll ntmdrilyesqrEgrisfymtnygegtvgsaaaldntdlvfgareagvlmyrdyplelfmaq cygnisdlgkgrqpvygckerhfvtissplatqTpqavgaayaakrananrvvicyfgegaa segdahagfnfaatleYpiiffcrnngyaistptseqyrgdgiaargpgygimsirvdgndv favynaRkearrravaenqpflieTmtyrigstdhpVsrlrhylqgwwdeeqekawrkqsrr kvmeafeqaerkpkpSpnllfsdvyqempaqlrkqqeslaHhlqtygehypldhfdk
posmap:
| snp-pos | pdb-pos-mapping |
| N71S | N21S |
| M82I | M32I |
| Q125E | Q75E |
| I213T | I158T |
| C258Y | C203Y |
| T310R | T255R |
| A328T | A273T |
| I361V | I285V |
| N404S | N326S |
| R429H | R351H |
Commad for SCWRL4:
/opt/SS12-Practical/scwrl4/Scwrl4 -i 2bfd_A.ent -s BCKDHA_2bfd_a.sequence_final -o model_OUT.pdb
