.snapfunrc

 
[snapfun]
# snapfun_utildir=path - path to package utilities, default: /usr/share/snapfun
snapfun_utildir=/usr/share/snapfun
# librg_utils_perl=path - path to librg-utils-perl utilities, default: /usr/share/librg-utils-perl
librg_utils_perl=/usr/share/librg-utils-perl
# blastpgp_segfilter=[T|F] - SEG filtering for blastpgpg, untested, default: F
blastpgp_segfilter=F
# blastpgp_processors=int - number of processors to use with blastpgp and hmmpfam, default: 1
blastpgp_processors=1
# hmmpfam executable
hmmpfam=hmm2pfam
# psic matrix
psic_matrix=/usr/share/psic/blosum62_psic.txt
# psic runner
runpsic=/usr/share/rost-runpsic/runNewPSIC.pl
# default mode of the program: [published|optimized|[predictprotein]
mode=optimized

[data]
# swiss_dat=path - location of UniProt/Swiss-Prot dat file
swiss_dat=/mnt/project/pracstrucfunc12/data/swissprot/uniprot_sprot.dat
# db_swiss=path - path to ID index of Swiss-Prot dat file (generated by /usr/share/librg-utils-perl/dbSwiss.pl)
db_swiss=/mnt/project/pracstrucfunc12/data/swissprot/dbswiss
# pfamdata=path - path to pfam database
pfamdata=/mnt/project/pracstrucfunc12/data/pfam_legacy/Pfam_ls

[blast]
# uniref=path - path to comprehensive sequence database (UniRef or equivalent)
uniref=/mnt/project/pracstrucfunc12/data/big/big
# uniref90=path - path to redundancy reduced database (UniRef90 or equivalent)
uniref90=/mnt/project/pracstrucfunc12/data/big/big_80
# swiss=path - path to SwissProt database
swiss=/mnt/project/pracstrucfunc12/data/swissprot/uniprot_sprot