Difference between revisions of "Fabry:Sequence-based mutation analysis/Journal"
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=== SIFT === |
=== SIFT === |
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=== Polyphen2 === |
=== Polyphen2 === |
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| + | IN: pickedSNPsNOINFO.txt<br> |
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| + | OUT: Polyphen.batch |
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| + | perl prepBatchPolyphen2.pl |
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=== SNAP === |
=== SNAP === |
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Revision as of 22:24, 12 June 2012
Fabry Disease » Sequence-based mutation analysis » Journal
INSERT IMPORTANT AND INTELLIGENT STUFF RIGHT HERE
Contents
Amino acid properties
IN: aa_properties.txt, resMass.txt, pickedSNPsNOINFO.txt
OUT: SNP_aaProps.txt, SNP_aaProps.wiki
perl read_AAProp.pl
Location
IN: pickedSNPsNOINFO.txt, P06280.dssp.ss, P06280.reprof.ss, P06280.psipred.ss
OUT: SNP_secStruc.txt, SNP_secStruc.wiki
perl compare_seq_struc.pl
Substitution matrices
IN: pickedSNPsNOINFO.txt, BLOSUM62.csv, PAM250.csv
OUT: SNP_substMatr.txt, SNP_substMatr.wiki
perl subst.pl
PSSM
Multiple sequence alignment
Scoring methods
SIFT
Polyphen2
IN: pickedSNPsNOINFO.txt
OUT: Polyphen.batch
perl prepBatchPolyphen2.pl
