Difference between revisions of "Sequence-based predictions GLA"
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<sup>by [[User:Drexler|Benjamin Drexler]] and [[User:Grandke|Fabian Grandke]]</sup> |
<sup>by [[User:Drexler|Benjamin Drexler]] and [[User:Grandke|Fabian Grandke]]</sup> |
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=Secondary structure prediction= |
=Secondary structure prediction= |
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| + | [[alpha_galactosidase_reference_amino_acid|GLA sequence]] |
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==PSIPRED== |
==PSIPRED== |
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http://bioinf.cs.ucl.ac.uk/psipred/ |
http://bioinf.cs.ucl.ac.uk/psipred/ |
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==Comparison with DSSP== |
==Comparison with DSSP== |
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http://swift.cmbi.ru.nl/servers/html/ |
http://swift.cmbi.ru.nl/servers/html/ |
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=Prediction of disordered regions= |
=Prediction of disordered regions= |
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Revision as of 16:31, 27 May 2011
by Benjamin Drexler and Fabian Grandke
Contents
Secondary structure prediction
PSIPRED
http://bioinf.cs.ucl.ac.uk/psipred/
Jpred3
http://www.compbio.dundee.ac.uk/www-jpred/index.html
Comparison with DSSP
http://swift.cmbi.ru.nl/servers/html/
Prediction of disordered regions
DISOPRED
http://bioinf.cs.ucl.ac.uk/disopred/
POODLE
http://mbs.cbrc.jp/poodle/poodle.html
IUPRED
http://iupred.enzim.hu/index.html
META-Disorder
http://www.predictprotein.org/
Prediction of transmembrane alpha-helices and signal peptides
Additional Proteins
TMHMM
Phobius and PolyPhobius
OCTOPUS and SPOCTOPUS
http://octopus.cbr.su.se/index.php
SignalP
TargetP
http://www.cbs.dtu.dk/services/TargetP/
Prediction of GO terms
GOPET
http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar
Pfam
ProtFun 2.2
http://www.cbs.dtu.dk/services/ProtFun/
References
<references />
