Difference between revisions of "Sequence-based predictions GLA"
From Bioinformatikpedia
(Created page with "<sup>by Benjamin Drexler and Fabian Grandke</sup> =Secondary structure prediction= ==PSIPRED== ==Jpred3== ==Comparison with DSSP== =Predict…") |
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=Secondary structure prediction= |
=Secondary structure prediction= |
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==PSIPRED== |
==PSIPRED== |
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| + | http://bioinf.cs.ucl.ac.uk/psipred/ |
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==Jpred3== |
==Jpred3== |
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| + | http://www.compbio.dundee.ac.uk/www-jpred/index.html |
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| + | |||
==Comparison with DSSP== |
==Comparison with DSSP== |
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| + | http://swift.cmbi.ru.nl/servers/html/ |
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=Prediction of disordered regions= |
=Prediction of disordered regions= |
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==DISOPRED== |
==DISOPRED== |
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| + | http://bioinf.cs.ucl.ac.uk/disopred/ |
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==POODLE== |
==POODLE== |
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| + | http://mbs.cbrc.jp/poodle/poodle.html |
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==IUPRED== |
==IUPRED== |
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| + | http://iupred.enzim.hu/index.html |
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==META-Disorder== |
==META-Disorder== |
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| + | http://www.predictprotein.org/ |
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=Prediction of transmembrane alpha-helices and signal peptides= |
=Prediction of transmembrane alpha-helices and signal peptides= |
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==Phobius and PolyPhobius == |
==Phobius and PolyPhobius == |
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| + | http://phobius.sbc.su.se/ |
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==OCTOPUS and SPOCTOPUS== |
==OCTOPUS and SPOCTOPUS== |
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| + | http://octopus.cbr.su.se/index.php |
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==SignalP == |
==SignalP == |
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==TargetP== |
==TargetP== |
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| + | http://www.cbs.dtu.dk/services/TargetP/ |
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=Prediction of GO terms= |
=Prediction of GO terms= |
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==GOPET== |
==GOPET== |
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| + | http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar |
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==Pfam== |
==Pfam== |
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| + | http://pfam.sanger.ac.uk/ |
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==ProtFun 2.2== |
==ProtFun 2.2== |
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| + | http://www.cbs.dtu.dk/services/ProtFun/ |
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= References = |
= References = |
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Revision as of 16:25, 27 May 2011
by Benjamin Drexler and Fabian Grandke
Contents
Secondary structure prediction
PSIPRED
http://bioinf.cs.ucl.ac.uk/psipred/
Jpred3
http://www.compbio.dundee.ac.uk/www-jpred/index.html
Comparison with DSSP
http://swift.cmbi.ru.nl/servers/html/
Prediction of disordered regions
DISOPRED
http://bioinf.cs.ucl.ac.uk/disopred/
POODLE
http://mbs.cbrc.jp/poodle/poodle.html
IUPRED
http://iupred.enzim.hu/index.html
META-Disorder
http://www.predictprotein.org/
Prediction of transmembrane alpha-helices and signal peptides
TMHMM
Phobius and PolyPhobius
OCTOPUS and SPOCTOPUS
http://octopus.cbr.su.se/index.php
SignalP
TargetP
http://www.cbs.dtu.dk/services/TargetP/
Prediction of GO terms
GOPET
http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar
Pfam
ProtFun 2.2
http://www.cbs.dtu.dk/services/ProtFun/
References
<references />
