Difference between revisions of "Sequence-Based Predictions Hemochromatosis"
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</figtable> |
</figtable> |
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| + | <!-- |
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| + | ############## ProtFun 2.2 predictions ############## |
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| + | |||
| + | >sp_Q30201_H |
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| + | # Functional category Prob Odds |
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| + | Amino_acid_biosynthesis 0.011 0.484 |
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| + | Biosynthesis_of_cofactors 0.105 1.452 |
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| + | Cell_envelope => 0.633 10.377 |
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| + | Cellular_processes 0.095 1.297 |
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| + | Central_intermediary_metabolism 0.231 3.663 |
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| + | Energy_metabolism 0.059 0.659 |
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| + | Fatty_acid_metabolism 0.016 1.265 |
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| + | Purines_and_pyrimidines 0.583 2.400 |
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| + | Regulatory_functions 0.013 0.079 |
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| + | Replication_and_transcription 0.019 0.073 |
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| + | Translation 0.079 1.801 |
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| + | Transport_and_binding 0.732 1.785 |
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| + | |||
| + | # Enzyme/nonenzyme Prob Odds |
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| + | Enzyme 0.208 0.727 |
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| + | Nonenzyme => 0.792 1.110 |
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| + | |||
| + | # Enzyme class Prob Odds |
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| + | Oxidoreductase (EC 1.-.-.-) 0.084 0.404 |
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| + | Transferase (EC 2.-.-.-) 0.062 0.179 |
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| + | Hydrolase (EC 3.-.-.-) 0.135 0.425 |
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| + | Lyase (EC 4.-.-.-) 0.049 1.054 |
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| + | Isomerase (EC 5.-.-.-) 0.010 0.321 |
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| + | Ligase (EC 6.-.-.-) 0.042 0.827 |
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| + | # Gene Ontology category Prob Odds |
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| + | Signal_transducer 0.201 0.939 |
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| + | Receptor 0.353 2.076 |
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| + | Hormone 0.002 0.365 |
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| + | Structural_protein 0.005 0.190 |
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| + | Transporter 0.024 0.219 |
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| + | Ion_channel 0.008 0.147 |
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| + | Voltage-gated_ion_channel 0.002 0.085 |
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| + | Cation_channel 0.010 0.221 |
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| + | Transcription 0.036 0.283 |
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| + | Transcription_regulation 0.018 0.147 |
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| + | Stress_response 0.274 3.108 |
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| + | Immune_response => 0.381 4.486 |
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| + | Growth_factor 0.013 0.943 |
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| + | Metal_ion_transport 0.009 0.020 |
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| + | // |
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| + | --> |
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Revision as of 12:40, 17 May 2012
Hemochromatosis>>Task 3: Sequence-based predictions
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Don't google it... but a hint: Caesar would solve it ;)
Contents
Short Task Description
Detailed description: Sequence-Based Predictions
Protocol
Secondary Structure
Disorder
Transmembrane Helices
Signal Peptides
GO Terms
GOPET
<figtable id="gopet">
| GOid | Aspect | Confidence | Go term |
|---|---|---|---|
| GO:0004872 | F (Molecular Function Ontology) | 91% | receptor activity |
| GO:0030106 | F (Molecular Function Ontology) | 88% | MHC class I receptor activity |
</figtable>
ProtFun
<figtable id="protfun">
| Functional category | Probability | Odds |
|---|---|---|
| Biosynthesis of cofactors | 0.105 | 1.452 |
| Cell envelope* | 0.633* | 10.377* |
| Central intermediary metabolism | 0.231 | 3.663 |
| Purines and pyrimidines | 0.583 | 2.400 |
| Transport and binding | 0.732 | 1.785 |
| Enzyme/nonenzyme | ||
| Enzyme | 0.208 | 0.727 |
| Nonenzyme* | 0.792* | 1.110* |
| Enzyme class | ||
| Hydrolase | 0.135 | 0.425 |
| Gene Ontology category | ||
| Signal transducer | 0.201 | 0.939 |
| Receptor | 0.353 | 2.076 |
| Stress response | 0.274 | 3.108 |
| Immune response* | 0.381* | 4.486* |
</figtable>
