Difference between revisions of "Sequence-Based Predictions Hemochromatosis"
From Bioinformatikpedia
Bernhoferm (talk | contribs) (→GOPET) |
Bernhoferm (talk | contribs) (→ProtFun) |
||
| Line 51: | Line 51: | ||
=== ProtFun === |
=== ProtFun === |
||
| + | |||
| + | <figtable id="protfun"> |
||
| + | {| class="wikitable", style="width:60%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000" |
||
| + | |- |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Functional category |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Probability |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Odds |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Biosynthesis of cofactors |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.105 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |1.452 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Cell envelope* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.633* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |10.377* |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Central intermediary metabolism |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.231 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |3.663 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Purines and pyrimidines |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.583 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |2.400 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Transport and binding |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.732 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |1.785 |
||
| + | |- |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Enzyme/nonenzyme |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Enzyme |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.208 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.727 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Nonenzyme* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.792* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |1.110* |
||
| + | |- |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Enzyme class |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Hydrolase |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.135 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.425 |
||
| + | |- |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Gene Ontology category |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Signal transducer |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.201 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.939 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Receptor |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.353 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |2.076 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Stress response |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.274 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |3.108 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |Immune response* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |0.381* |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |4.486* |
||
| + | |- |
||
| + | |+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description |
||
| + | |} |
||
| + | </figtable> |
||
Revision as of 12:38, 17 May 2012
Hemochromatosis>>Task 3: Sequence-based predictions
Qc terxepssrw evi jypp sj aiewipw. Mrjsvq xli Uyiir, ws xlex wli qmklx wlss xliq eaec. Livi ai ks 'vsyrh xli qypfivvc fywl. Ks qsroic KS!
Aqw vjkpm K co etcba, dwv vjga ycpv aqw vq vjkpm vjcv. K mpqy ugetgvu. Mggr vjg rcpvcnqqpu. Cnycau mggr vjg rcpvcnqqpu.
Don't google it... but a hint: Caesar would solve it ;)
Contents
Short Task Description
Detailed description: Sequence-Based Predictions
Protocol
Secondary Structure
Disorder
Transmembrane Helices
Signal Peptides
GO Terms
GOPET
<figtable id="gopet">
| GOid | Aspect | Confidence | Go term |
|---|---|---|---|
| GO:0004872 | F (Molecular Function Ontology) | 91% | receptor activity |
| GO:0030106 | F (Molecular Function Ontology) | 88% | MHC class I receptor activity |
</figtable>
ProtFun
<figtable id="protfun">
| Functional category | Probability | Odds |
|---|---|---|
| Biosynthesis of cofactors | 0.105 | 1.452 |
| Cell envelope* | 0.633* | 10.377* |
| Central intermediary metabolism | 0.231 | 3.663 |
| Purines and pyrimidines | 0.583 | 2.400 |
| Transport and binding | 0.732 | 1.785 |
| Enzyme/nonenzyme | ||
| Enzyme | 0.208 | 0.727 |
| Nonenzyme* | 0.792* | 1.110* |
| Enzyme class | ||
| Hydrolase | 0.135 | 0.425 |
| Gene Ontology category | ||
| Signal transducer | 0.201 | 0.939 |
| Receptor | 0.353 | 2.076 |
| Stress response | 0.274 | 3.108 |
| Immune response* | 0.381* | 4.486* |
</figtable>
