Difference between revisions of "Sequence-based analyses of ARS A"
From Bioinformatikpedia
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=== Prediction of Disordered Regions === |
=== Prediction of Disordered Regions === |
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+ | ==== SignalP ==== |
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+ | <code>sudo /apps/signalp-3.0/signalp -t gram- ../BACR.fasta > BACR.signalp</code> <br/> |
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+ | <code>sudo /apps/signalp-3.0/signalp -t euk ../ARSA.fasta > ARSA.signalp </code> <br/> |
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+ | <code>sudo /apps/signalp-3.0/signalp -t euk ../A4.fasta > A4.signalp</code> <br/> |
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+ | <code>sudo /apps/signalp-3.0/signalp -t euk ../LAMP1.fasta > LAMP1.signalp</code> <br/> |
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+ | <code>sudo /apps/signalp-3.0/signalp -t euk ../INSL5.fasta > INSL5.signalp</code> <br/> |
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+ | <code>sudo /apps/signalp-3.0/signalp -t euk ../RET4.fasta > RET4.signalp</code> <br/> |
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==== DISOPRED ==== |
==== DISOPRED ==== |
Revision as of 15:04, 25 May 2011
Contents
Additional Proteins
The following proteins are additionally used for the prediction of transmembrand alpha-helices and signal peptides and for the prediction of GO Terms:
Secondary Structure Prediction
DSSP
Prediction of Disordered Regions
SignalP
sudo /apps/signalp-3.0/signalp -t gram- ../BACR.fasta > BACR.signalp
sudo /apps/signalp-3.0/signalp -t euk ../ARSA.fasta > ARSA.signalp
sudo /apps/signalp-3.0/signalp -t euk ../A4.fasta > A4.signalp
sudo /apps/signalp-3.0/signalp -t euk ../LAMP1.fasta > LAMP1.signalp
sudo /apps/signalp-3.0/signalp -t euk ../INSL5.fasta > INSL5.signalp
sudo /apps/signalp-3.0/signalp -t euk ../RET4.fasta > RET4.signalp