Difference between revisions of "Secondary Structure Prediction BCKDHA"
From Bioinformatikpedia
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+ | |TOPO_DOM||23||135||NON CYTOPLASMIC |
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=== Polyphobius === |
=== Polyphobius === |
Revision as of 14:41, 24 May 2011
Contents
1. Secondary structure prediction
2. Prediction of disordered regions
3. Prediction of transmembrane alpha-helices and signal peptides
Transmembrane topology and signal peptides are features that are likely to be conserved during evolution.
Phobius
Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning.
sp|P12694|ODBA_HUMAN (BCKDHA) | |||
---|---|---|---|
Signal | 1 | 34 | |
Region | 1 | 16 | N-Region |
Region | 17 | 25 | H-Region |
Region | 26 | 34 | C-Region |
TOPO_DOM | 35 | 445 | non cytoplasmic |
sp|P02945|BACR_HALSA | ||||
---|---|---|---|---|
TOPO_DOM | 1 | 22 | NON CYTOPLASMIC. | |
TRANSMEM | 23 | 42 | ||
TOPO_DOM | 43 | 53 | CYTOPLASMIC. | |
TRANSMEM | 54 | 76 | ||
TOPO_DOM | 77 | 95 | NON CYTOPLASMIC. | |
TRANSMEM | 96 | 114 | ||
TOPO_DOM | 115 | 120 | CYTOPLASMIC. | |
TRANSMEM | 121 | 142 | ||
TOPO_DOM | 143 | 147 | NON CYTOPLASMIC. | |
TRANSMEM | 148 | 169 | ||
TOPO_DOM | 170 | 189 | CYTOPLASMIC. | |
TRANSMEM | 190 | 212 | ||
TOPO_DOM | 213 | 217 | NON CYTOPLASMIC. | |
TRANSMEM | 218 | 237 | ||
TOPO_DOM | 238 | 262 | CYTOPLASMIC. |
sp|Q9Y5Q6|INSL5_HUMAN | |||
---|---|---|---|
SIGNAL | 1 | 22 | |
REGION | 1 | 5 | N-REGION |
REGION | 6 | 17 | H-REGION |
REGION | 18 | 22 | C-REGION |
TOPO_DOM | 23 | 135 | NON CYTOPLASMIC |
Polyphobius
OBDA_HUMAN (BCKDHA) | |||
---|---|---|---|
TOPO_DOM | 1 | 445 | Non cytoplasmic |
sp|P02945|BACR_HALSA | ||||
---|---|---|---|---|
TOPO_DOM | 1 | 21 | NON CYTOPLASMIC. | |
TRANSMEM | 22 | 43 | ||
TOPO_DOM | 44 | 54 | CYTOPLASMIC. | |
TRANSMEM | 55 | 77 | ||
TOPO_DOM | 78 | 94 | NON CYTOPLASMIC. | |
TRANSMEM | 95 | 114 | ||
TOPO_DOM | 115 | 120 | CYTOPLASMIC. | |
TRANSMEM | 121 | 141 | ||
TOPO_DOM | 142 | 147 | NON CYTOPLASMIC. | |
TRANSMEM | 148 | 166 | ||
TOPO_DOM | 167 | 186 | CYTOPLASMIC. | |
TRANSMEM | 187 | 205 | ||
TOPO_DOM | 206 | 215 | NON CYTOPLASMIC. | |
TRANSMEM | 216 | 237 | ||
TOPO_DOM | 238 | 262 | CYTOPLASMIC. |