Difference between revisions of "Secondary Structure Prediction BCKDHA"
From Bioinformatikpedia
(→Phobius and Polyphobius) |
(→Phobius and Polyphobius) |
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== 3. Prediction of transmembrane alpha-helices and signal peptides == |
== 3. Prediction of transmembrane alpha-helices and signal peptides == |
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| + | Transmembrane topology and signal peptides are features that are likely to be conserved during evolution. |
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| − | === Phobius and Polyphobius === |
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| + | |||
| + | === Phobius === |
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Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. |
Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. |
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The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning. |
The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning. |
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<tt> |
<tt> |
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{| |
{| |
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| − | !colspan=4" sp|P12694|ODBA_HUMAN |
+ | !colspan=4" sp|P12694|ODBA_HUMAN (BCKDHA) |
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|- |
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|Signal |
|Signal |
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| Line 37: | Line 39: | ||
| 445 |
| 445 |
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| non cytoplasmic |
| non cytoplasmic |
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| + | |} |
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| + | </tt> |
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| + | |||
| + | === Polyphobius === |
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| + | <tt> |
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| + | {| |
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| + | !="4" OBDA_HUMAN (BCKDHA) |
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| + | |- |
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| + | |TOPO_DOM |
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| + | |1 |
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| + | |445 |
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| + | |Non cytoplasmic |
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|} |
|} |
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</tt> |
</tt> |
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Revision as of 14:21, 24 May 2011
Contents
1. Secondary structure prediction
2. Prediction of disordered regions
3. Prediction of transmembrane alpha-helices and signal peptides
Transmembrane topology and signal peptides are features that are likely to be conserved during evolution.
Phobius
Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning.
| P12694|ODBA_HUMAN (BCKDHA) | |||
|---|---|---|---|
| Signal | 1 | 34 | |
| Region | 1 | 16 | N-Region |
| Region | 17 | 25 | H-Region |
| Region | 26 | 34 | C-Region |
| TOPO_DOM | 35 | 445 | non cytoplasmic |
Polyphobius
| ="4" OBDA_HUMAN (BCKDHA) | |||
|---|---|---|---|
| TOPO_DOM | 1 | 445 | Non cytoplasmic |
