Difference between revisions of "Sequence Alignments TSD"
From Bioinformatikpedia
(→PSI-Blast) |
(→PSI-Blast) |
||
| Line 23: | Line 23: | ||
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10E-10 |
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10E-10 |
||
|- |
|- |
||
| − | | style="border-style: solid; border-width: 0 0 0 0" | |
+ | | style="border-style: solid; border-width: 0 0 0 0" | BIG80 |
| − | | style="border-style: solid; border-width: 0 0 0 0" | |
+ | | style="border-style: solid; border-width: 0 0 0 0" | 3m53 |
| − | | style="border-style: solid; border-width: 0 0 0 0" | |
+ | | style="border-style: solid; border-width: 0 0 0 0" | 4m3 |
| − | | style="border-style: solid; border-width: 0 0 0 0" | |
+ | | style="border-style: solid; border-width: 0 0 0 0" | 18m57 |
| + | | style="border-style: solid; border-width: 0 0 0 0" | 21m9 |
||
| + | |- |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" | BIG |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |17m19 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |11m13 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |16m39 |
||
| + | | style="border-style: solid; border-width: 0 0 0 0" |11m13 |
||
|- |
|- |
||
| − | |||
|- |
|- |
||
|} |
|} |
||
Revision as of 20:43, 3 May 2012
Sequence searches
There are several alignment methods provided by various initiatives, who tackle the problem of sequence searches. Here some of them are applied for the Hex A protein and analyzed. For the searches non redundant protein databases are used. The outputs are adapted to each other and put in comparison in order to determine the best results. A protocol containing the basic steps taken is available.
Blast
PSI-Blast
| Iterations | 2 | 2 | 10 | 10 |
|---|---|---|---|---|
| E-value | 0.002 | 10E-10 | 0.002 | 10E-10 |
| BIG80 | 3m53 | 4m3 | 18m57 | 21m9 |
| BIG | 17m19 | 11m13 | 16m39 | 11m13 |
Table 1: Different performances of PSI-Blast.
